{ "_id": "6acd7265a14063b82c3aba14", "Package": "mappingAS", "Type": "Package", "Title": "Spatial Metrics and Habitat Conversion for Extinction Risk\nAssessment", "Version": "1.15.0", "Authors@R": "person(\"Antônio Lucas Barreira\", email = \"barreira_rodrigues@hotmail.com\", role = c(\"aut\", \"cre\", \"cph\"))", "Author": "Antônio Lucas Barreira [aut, cre, cph]", "Maintainer": "Antônio Lucas Barreira ", "Description": "A spatial analytical framework for preliminary species\nextinction-risk screening following the IUCN Red List Criterion\nB guidelines. From occurrence points it computes the Extent of\nOccurrence (EOO) and Area of Occupancy (AOO) on a data-centred\nequal-area projection, assigns provisional Criterion B\ncategories, and integrates 'MapBiomas' land-use/land-cover data\nto quantify the proportion of anthropogenic conversion versus\nremaining natural habitat within each range metric, with\nper-class breakdowns and land-cover time series. Several\n'MapBiomas' initiatives are supported through one standardised\nlegend - 'MapBiomas' Brazil, the Pan-Amazon / Amazonia\ncollection (RAISG), Colombia, Argentina, Bolivia, Chile,\nEcuador, Peru, Venezuela, Paraguay and Uruguay - so a species\nanywhere these products cover can be screened as readily as a\nBrazilian one. For ranges outside 'MapBiomas' coverage it can\nfall back to the global 'Esri' / 'Impact Observatory' 10 m\nannual land cover derived from 'Sentinel-2' (the product behind\nthe 'ArcGIS' Living Atlas Land Cover Explorer), so a species\nanywhere on Earth can be screened. It also integrates\n'MapBiomas' Fire to compute burned-area metrics and fire time\nseries, and quantifies the overlap of the range with protected\nareas from the global World Database on Protected Areas (WDPA).\n'MapBiomas' data are read either locally over the network via\n'GDAL' '/vsicurl/' (no 'Google Earth Engine' account required)\nor server-side through 'Google Earth Engine' (GEE) for\nlarge-scale assessments. Outputs include interactive and\npublication ready maps and charts, spatial\n(shapefile/'GeoPackage') and raster exports, and a written\nassessment report (HTML, text or Word). 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from a range", "topics": [ "countries_of_occurrence" ] }, { "page": "cover_timeseries", "title": "MapBiomas land-cover composition over time for a polygon", "topics": [ "cover_timeseries" ] }, { "page": "elevation_preferences", "title": "Suggest elevation preferences from the occurrences' elevation", "topics": [ "elevation_preferences" ] }, { "page": "esri_legend", "title": "Sentinel-2 / Esri global 10 m land-cover legend", "topics": [ "esri_legend" ] }, { "page": "export_ranges", "title": "Export EOO and AOO as spatial files (shapefile or GeoPackage)", "topics": [ "export_ranges" ] }, { "page": "factsheet_html", "title": "Standalone HTML species factsheet with user metadata and photos", "topics": [ "factsheet_html" ] }, { "page": "fire_areas", "title": "Area (km^2) per fire value from a cropped fire raster", "topics": [ "fire_areas" ] }, { "page": "fire_palette", "title": "Sequential palette for fire frequency (YlOrRd)", "topics": [ "fire_palette" ] }, { "page": "fire_raster_local", 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"page": "map_aoh", "title": "Interactive Area of Habitat (AOH) map for one species", "topics": [ "map_aoh" ] }, { "page": "map_species", "title": "Interactive map of a species' points, EOO and AOO (MapBiomas + fire)", "topics": [ "map_species" ] }, { "page": "map_static", "title": "Publication-ready static map of a species (MapBiomas + EOO + AOO + points)", "topics": [ "map_static" ] }, { "page": "mas_plotly", "title": "Turn a mappingAS chart into an interactive plotly widget", "topics": [ "mas_plotly" ] }, { "page": "mb_class_areas_gee", "title": "MapBiomas class areas via Google Earth Engine (optional backend)", "topics": [ "mb_class_areas_gee" ] }, { "page": "mb_class_areas_raster", "title": "Tabulate area per MapBiomas class from a cropped raster", "topics": [ "mb_class_areas_raster" ] }, { "page": "mb_fire_url", "title": "Build a MapBiomas Fire (Fogo) GeoTIFF URL", "topics": [ "mb_fire_url" ] }, { "page": "mb_groups", "title": "Group lookup vectors for MapBiomas conservation groups", "topics": [ "mb_groups" ] }, { "page": "mb_initiatives", "title": "MapBiomas initiatives supported by mappingAS", "topics": [ "mb_initiatives" ] }, { "page": "mb_legend", "title": "Standardised MapBiomas legend with conservation groupings", "topics": [ "mb_legend" ] }, { "page": "mb_palette", "title": "Official MapBiomas colours for a set of class codes", "topics": [ "mb_palette" ] }, { "page": "mb_raster_local", "title": "Crop a MapBiomas LULC raster to an area of interest (local backend)", "topics": [ "mb_raster_local" ] }, { "page": "mb_source_url", "title": "Build the MapBiomas land-use GeoTIFF URL for a given year and initiative", "topics": [ "mb_source_url" ] }, { "page": "mb_years", "title": "Years available for a MapBiomas initiative/collection", "topics": [ "mb_years" ] }, { "page": "pa_table", "title": "Per-species table of Protected areas overlapping the range", "topics": [ "pa_table" ] }, { "page": "plot_class_trendline", "title": "Regression trendline of one land-cover class through time", "topics": [ "plot_class_trendline" ] }, { "page": "plot_conversion", "title": "Habitat composition chart (natural / altered / water / other) for EOO and AOO", "topics": [ "plot_conversion" ] }, { "page": "plot_conversion_donut", "title": "MapBiomas composition donut charts (EOO and AOO)", "topics": [ "plot_conversion_donut" ] }, { "page": "plot_fire_timeseries", "title": "Bar/line chart of burned area (%) over time", "topics": [ "plot_fire_timeseries" ] }, { "page": "plot_protection", "title": "Protection chart (inside vs outside Protected areas) for EOO and AOO", "topics": [ "plot_protection" ] }, { "page": "plot_timeseries", "title": "Stacked-area chart of land-cover percentage over time", "topics": [ "plot_timeseries" ] }, { "page": "protected_areas", "title": "Read Protected areas intersecting an area of interest", "topics": [ "protected_areas" ] }, { "page": "read_occurrences", "title": "Read species occurrence points from XLSX, CSV or vector files", "topics": [ "read_occurrences" ] }, { "page": "run_app", "title": "Launch the mappingAS Shiny application", "topics": [ "run_app" ] }, { "page": "s2_raster_local", "title": "Crop a Sentinel-2 / Esri LULC mosaic to an area of interest", "topics": [ "s2_raster_local" ] }, { "page": "s2_source_url", "title": "Build the Sentinel-2 / Esri land-cover GeoTIFF URL for a tile and year", "topics": [ "s2_source_url" ] }, { "page": "s2_years", "title": "Years available for the global Sentinel-2 / Esri land-cover series", "topics": [ "s2_years" ] }, { "page": "summarise_conversion", "title": "Summarise habitat conversion from MapBiomas class areas", "topics": [ "summarise_conversion" ] }, { "page": "summarise_fire", "title": "Summarise fire pressure inside a range", "topics": [ "summarise_fire" ] }, { "page": "summarise_protected", "title": "Overlap between a species' range and federal Protected areas", "topics": [ "summarise_protected" ] }, { "page": "timeseries_for_species", "title": 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